Vitessce

Description

Vitessce is a framework and visual integration tool for exploration of (spatial) single-cell experiment data. This demo focusses on scalable, linked visualizations that support both spatial and non-spatial representation of cell-level and molecule-level data.

Gallery

Visual Integration Tool for Exploration of Spatial Single-Cell Experiments. Screenshot of the interactive visualization tool, Vitessce, featuring multiple color-coordinated 2D views of cellular data and interactive controls.

Publications

• Vitessce: a framework for integrative visualization of multi-modal and spatially-resolved single-cell data
• The human body at cellular resolution: the NIH Human Biomolecular Atlas Program

Websites

• Vitessce

Software

GitHub

• vitessce
• vitessce-python
• vitessceR

Funding

• Data Exploration and Visualization Tools for HuBMAP and a Human Reference Atlas (NIH/OD Federal OT2 OD033758)
  National Institutes of Health - Common Fund